PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G09710.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 650aa    MW: 69137.7 Da    PI: 9.5913
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G09710.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-09200244144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r+rW++eEde l  avk+ G g+W+ I +       Rt+ q+  rw
      AT1G09710.2 200 RKRWSAEEDEELFAAVKRCGEGNWAHIVKgdFR-GERTASQLSQRW 244
                      89************************9652134.478888887777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.503195252IPR017930Myb domain
SuperFamilySSF466891.44E-11197250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-12197249IPR009057Homeodomain-like
SMARTSM007172.1E-9199250IPR001005SANT/Myb domain
PfamPF002492.7E-6200244IPR001005SANT/Myb domain
CDDcd116604.96E-14201249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MVANNNTSSN RRKRIITEGD IATLLLRYDM ETILRMLQEI SYCSETKMDW NALVKKTTTG  60
ITNAREYQLL WRHLSYRHPL LPVEDDALPL DDDSDMECEL EASPAVSHEA SVEAIAHVKV  120
MAASYVLSES DILDDSTVEA PLTINIPYAL PEGSQEPSES PWSSRGMNIN FPVCLQKVTS  180
TEGMNGNGSA GISMAFRRKR KRWSAEEDEE LFAAVKRCGE GNWAHIVKGD FRGERTASQL  240
SQRWALIRKR CHTSTSVSQC GLQGTEAKLA VNHALSLALG NRPPSNKLAI GTSSRRSFPA  300
NSSIYVITED ALVWLPLACL NQKLAYLFNC GLMPTTSSCT ITETEANGGS SSQGQQQSKP  360
IVQALPRAGT SLPAAKSRVV KKTTASSTSR SDLMVTANSV AAAACMGDVL TAASGRKVEP  420
GKTDAPRVPK TKPVKHASTV CMPQPSGSLS MPKVEPGTSV AASIRSLANG KLKPVMASSS  480
SNKPPLIAPR SEGSSMLSAS APLASLSRIV SNQRVFAGSV PATEIVTCKP DGGQKGQARG  540
NEASSSAAIQ PHQITSRNLE ISQGKQATQA QSPNLLPRKV PVVRTAVHCA TNQKLMDKPS  600
DQTVVPIRGA GSQSKAKGEV NSKVGPVIKV SSVCGKPLEV ATVAGTGQGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201RRKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.449710.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT1G09710
AtGenExpressAT1G09710
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G09710.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G09710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4628040.0AF462804.1 Arabidopsis thaliana At1g09710/F21M12_10 mRNA, complete cds.
GenBankAY1336470.0AY133647.1 Arabidopsis thaliana At1g09710/F21M12_10 mRNA, complete cds.
GenBankAY5195460.0AY519546.1 Arabidopsis thaliana MYB transcription factor (At1g09710) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF21M120.0AC000132.1 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001184950.10.0DNA binding protein
TrEMBLF4I1290.0F4I129_ARATH; DNA binding protein
STRINGAT1G09710.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Representative plantOGRP59231520
Publications ? help Back to Top
  1. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  2. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]